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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113775427_113776190_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113775427 - 113776190
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TACCCTCTAACT
Flanking Amino Acid:
LEGREFWPREVWSRYAKKLS
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
82.6
0.73
0.7
81.3
30.8
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
59.5
0.38
1.7
75.45
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023553
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019212
113768512 - 113776274
7763