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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113784867_113785786_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113784867 - 113785786
Intron Length:
920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTGGT
5'SS Class:
major
3'SS Sequence:
CTGCTTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
AGAGCTTTAAAC
Flanking Amino Acid:
KRGDWKDPTPRLVLHFESGG
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
69.2
41.7
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
76.8
0.6
0.8
68.8
37.2
Minor 5ss
33.4
-1.9
3.5
50.3
45.9
Minor BPS
55.4
0.15
1.5
59.74
39

Associated Gene:

Gene:
NEIL2
Ensembl Gene ID:
ENSAPLG00000011130
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011577
113783608 - 113786592
2985