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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113793834_113794105_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
113793834 - 113794105
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGCTGAAC
5'SS Class:
weak_major
3'SS Sequence:
GTCCGTCCAGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTACCCCTCACT
Flanking Amino Acid:
NLNKTKTPAGNESLTPTTSS
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.6
0.16
1.1
55.8
37
Major BPS
85
0.87
0.8
85.6
23
Major PPT
64.8
0.33
1
59
37
Minor 5ss
27.8
-2.5
3.2
33.4
36.1
Minor BPS
55
0.24
2.1
79.53
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011103
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011560
113792423 - 113796716
4294