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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113887500_113888350_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113887500 - 113888350
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGGAG
5'SS Class:
major
3'SS Sequence:
TATTTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CATATTTTATTT
Flanking Amino Acid:
VKGEKLQVLSNEGEWWLAKS
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
66.8
38.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.7
0.82
0.7
85.6
28.6
Minor 5ss
30.3
-2.3
3.5
37.6
41.6
Minor BPS
49.9
0.07
1.6
64.72
40.6

Associated Gene:

Gene:
BLK
Ensembl Gene ID:
ENSAPLG00000014958
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015648
113873403 - 113903866
30464
ENSAPLT00000046849
113873403 - 113894617
21215