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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113894438_113896870_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113894438 - 113896870
Intron Length:
2433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCATCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTCCATCAAAG
Flanking Amino Acid:
KSKPPPAPPKGRQFINIPHL
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
64.7
0.33
1.1
64.3
35.7
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
49.7
-0.1
2
64.47
42.4

Associated Gene:

Gene:
BLK
Ensembl Gene ID:
ENSAPLG00000014958
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015648
113873403 - 113903866
30464