About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113896962_113903786_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113896962 - 113903786
Intron Length:
6825

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AACAATTTAATT
Flanking Amino Acid:
RASRSGCVASRMGLLGSKNQ
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.7
82.9
36.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.8
0.81
0.8
80.6
31.5
Minor 5ss
24.8
-2.9
3.6
33.4
41.8
Minor BPS
53.6
0.19
1.5
65.17
39.5

Associated Gene:

Gene:
BLK
Ensembl Gene ID:
ENSAPLG00000014958
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015648
113873403 - 113903866
30464