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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113916326_113917056_R

Intron Information:

Intron Rank:
141432
Intron Class:
major
Intron Phase:
Intron Coordinates:
113916326 - 113917056
Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGCAGG
5'SS Class:
major
3'SS Sequence:
TTTGCTTGGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.3
63.6
48.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.2
0.48
1.1
68.3
42.2
Minor 5ss
34.2
-1.8
2.7
40.7
45.2
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023453
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028352
113915494 - 113918941
3448