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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113917457_113918137_R

Intron Information:

Intron Rank:
141433
Intron Class:
major
Intron Phase:
Intron Coordinates:
113917457 - 113918137
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATCATC
5'SS Class:
major
3'SS Sequence:
TTTTTCTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TTTTAGGGGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
74.1
36.4
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
87.9
0.85
0.6
81.4
30.6
Minor 5ss
38.6
-1.3
3
51.7
45.1
Minor BPS
41.5
-0.5
2.8
72.87
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023453
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028352
113915494 - 113918941
3448