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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113918320_113918639_R

Intron Information:

Intron Rank:
141434
Intron Class:
major
Intron Phase:
Intron Coordinates:
113918320 - 113918639
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCACCGGGT
5'SS Class:
major
3'SS Sequence:
CTTTATCATTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTTCTTTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.2
67.4
41
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
68.7
0.42
1.1
72.6
36.7
Minor 5ss
25.1
-2.9
4.5
46.9
48.5
Minor BPS
77.7
0.86
1.5
87.09
31.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023453
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028352
113915494 - 113918941
3448