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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11395851_11416331_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11395851 - 11416331
Intron Length:
20481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCCCG
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TTCTCTTCCATT
Flanking Amino Acid:
LRAKMGGLLQSIASADMDLN
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.3
48.3
47.8
Major BPS
65
0.37
1.3
76.1
38
Major PPT
93.3
0.97
0.6
89.3
19.4
Minor 5ss
42.7
-0.8
3.1
57.6
46.6
Minor BPS
52.8
0.17
2
75.4
42.3

Associated Gene:

Gene:
COMMD1
Ensembl Gene ID:
ENSAPLG00000006974
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007228
11343450 - 11416827
73378
ENSAPLT00000033853
11343450 - 11420325
76876
ENSAPLT00000022982
11393016 - 11420325
27310
ENSAPLT00000021390
11343450 - 11416553
73104
ENSAPLT00000021183
11343450 - 11418117
74668