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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113958833_113959927_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
113958833 - 113959927
Intron Length:
1095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTTGGTGTC
5'SS Class:
weak_major
3'SS Sequence:
TTCTGTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATGTGTAACT
Flanking Amino Acid:
WGWKHDYDLPEEESRG*
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.9
0.12
1.3
57.5
41.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.4
0.73
0.7
81.2
30.9
Minor 5ss
33.5
-1.9
3.4
41
39.5
Minor BPS
53.2
0.18
2.4
80.24
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014703
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031594
113957054 - 113967745
10692