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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113959426_113959927_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
113959426 - 113959927
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTTGGTGTC
5'SS Class:
weak_major
3'SS Sequence:
TCTCTGCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAGAT
U12 Branch Point Sequence:
CTCTGCTTACAG
Flanking Amino Acid:
WGWKHDYDLPEQEIQELLHV
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.9
0.12
1.3
57.5
41.6
Major BPS
70.4
0.51
1
66.8
39.9
Major PPT
82.4
0.73
0.8
75.8
32.8
Minor 5ss
33.5
-1.9
3.4
41
39.5
Minor BPS
45.5
-0.4
2.2
51.73
48.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014703
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015329
113959347 - 113967745
8399