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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113960007_113960237_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113960007 - 113960237
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCACCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCTTTTCACC
Flanking Amino Acid:
YNVDEVRQAIADSWPMNFDD
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.4
20.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.4
0.66
0.8
74.3
29.2
Minor 5ss
34.8
-1.7
2.8
44.9
43.2
Minor BPS
61.4
0.34
1.7
74.92
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014703
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015329
113959347 - 113967745
8399
ENSAPLT00000031594
113957054 - 113967745
10692
ENSAPLT00000023064
113957054 - 113967745
10692