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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113962918_113964245_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113962918 - 113964245
Intron Length:
1328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTATACA
Flanking Amino Acid:
QLGVGLAKLLRKRFGKNNVI
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
79.7
35.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.3
0.79
0.9
80.9
35.5
Minor 5ss
42
-0.9
2.9
58.1
46.5
Minor BPS
50
-0
1.9
67.28
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014703
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031594
113957054 - 113967745
10692
ENSAPLT00000023064
113957054 - 113967745
10692
ENSAPLT00000015329
113959347 - 113967745
8399