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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113985816_113987533_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113985816 - 113987533
Intron Length:
1718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGCTGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTGACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTCCTTATTT
Flanking Amino Acid:
LETTDRMQENLLNSVLKPSQ
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.1
53.5
40.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.8
0.63
0.9
74.6
40
Minor 5ss
41.7
-0.9
3.1
59.8
45
Minor BPS
77.1
0.93
1.5
90.41
33.6

Associated Gene:

Gene:
MTMR9
Ensembl Gene ID:
ENSAPLG00000014233
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035736
113985716 - 114005674
19959