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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113990675_113991256_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113990675 - 113991256
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
ATGCTCTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
GTCCCTTTATTT
Flanking Amino Acid:
EALVVREWLQAGHPFQLRCA
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
84
26.7
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
71.6
0.49
0.9
63.1
38.9
Minor 5ss
31.6
-2.1
2.6
37.4
40
Minor BPS
55.9
0.26
1.6
69.71
41.8

Associated Gene:

Gene:
MTMR9
Ensembl Gene ID:
ENSAPLG00000014233
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039223
113983542 - 114005674
22133
ENSAPLT00000035736
113985716 - 114005674
19959
ENSAPLT00000014841
113985235 - 114005674
20440