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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113991399_113993488_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113991399 - 113993488
Intron Length:
2090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTT
5'SS Class:
strong_major
3'SS Sequence:
ACCTTTCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TACTCATTCATA
Flanking Amino Acid:
AACLAAQCIDREGASVLVHG
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
77.8
0.63
0.8
71.9
32
Minor 5ss
36
-1.6
3.6
55.8
48.4
Minor BPS
50.8
0.02
2
65.46
41.2

Associated Gene:

Gene:
MTMR9
Ensembl Gene ID:
ENSAPLG00000014233
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039223
113983542 - 114005674
22133
ENSAPLT00000035736
113985716 - 114005674
19959
ENSAPLT00000014841
113985235 - 114005674
20440