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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113994637_113996320_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113994637 - 113996320
Intron Length:
1684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
GTCCTCCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TGTCTCCTAATT
Flanking Amino Acid:
LSYYHKKNGMVMMRSSQPLT
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
71.5
41.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
74.8
0.56
0.8
68.2
32.1
Minor 5ss
39.7
-1.2
2.8
46.4
44.2
Minor BPS
61.1
0.43
1.7
78.82
37.1

Associated Gene:

Gene:
MTMR9
Ensembl Gene ID:
ENSAPLG00000014233
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039223
113983542 - 114005674
22133
ENSAPLT00000035736
113985716 - 114005674
19959
ENSAPLT00000014841
113985235 - 114005674
20440