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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113996495_114002009_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113996495 - 114002009
Intron Length:
5515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GTTTTCTGACCT
Flanking Amino Acid:
EQEFELLSSVTDEWRLSCAN
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.7
40.2
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
87.5
0.84
0.6
85
22.6
Minor 5ss
43.4
-0.7
2.9
53
46
Minor BPS
61.8
0.45
1.8
81.31
40.1

Associated Gene:

Gene:
MTMR9
Ensembl Gene ID:
ENSAPLG00000014233
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039223
113983542 - 114005674
22133
ENSAPLT00000035736
113985716 - 114005674
19959
ENSAPLT00000014841
113985235 - 114005674
20440