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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_114002912_114005489_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
114002912 - 114005489
Intron Length:
2578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAG
U12 Branch Point Sequence:
TTGCTCCTAAGA
Flanking Amino Acid:
LHANIDCVEKRFVGSLGTIV
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
58
0.2
1.5
65.8
39.5
Major PPT
79
0.65
0.9
73.2
37.2
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
49.3
-0
2
64.98
41.4

Associated Gene:

Gene:
MTMR9
Ensembl Gene ID:
ENSAPLG00000014233
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039223
113983542 - 114005674
22133
ENSAPLT00000035736
113985716 - 114005674
19959
ENSAPLT00000014841
113985235 - 114005674
20440