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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_114070756_114070840_R

Intron Information:

Intron Rank:
144644
Intron Class:
major
Intron Phase:
Intron Coordinates:
114070756 - 114070840
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAC
U12 Branch Point Sequence:
CTTTTCTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
59.7
0.24
1.3
65.3
41.6
Major PPT
83.7
0.76
0.7
80
25.6
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
63.8
0.43
1.7
74.1
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025176
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046393
114070612 - 114071826
1215
ENSAPLT00000018520
114070621 - 114073210
2590