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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_114079357_114080506_R

Intron Information:

Intron Rank:
155242
Intron Class:
major
Intron Phase:
Intron Coordinates:
114079357 - 114080506
Intron Length:
1150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATACGC
5'SS Class:
major
3'SS Sequence:
TTATGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AAACCCTCTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
62.7
42.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84
0.76
0.8
81.2
36.2
Minor 5ss
32.4
-2
3.1
43.2
43.8
Minor BPS
49.3
0.03
1.9
66.95
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031008
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046023
114074947 - 114080544
5598