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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11420065_11420365_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11420065 - 11420365
Intron Length:
301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGTTTTGATC
Flanking Amino Acid:
AQLKPTFISKMNTAVQLLLV
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
81.3
0.7
0.9
81.6
34.7
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
63.2
0.4
1.3
72.05
33.8

Associated Gene:

Gene:
CRLS1
Ensembl Gene ID:
ENSAPLG00000007013
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007275
11418558 - 11423448
4891