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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11420751_11421224_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11420751 - 11421224
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGATTTTTCACT
Flanking Amino Acid:
VSLTCANLIPVSLTSMIILR
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.3
0.75
0.9
80.3
37.3
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
60.2
0.4
1.7
76.8
39.9

Associated Gene:

Gene:
CRLS1
Ensembl Gene ID:
ENSAPLG00000007013
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007275
11418558 - 11423448
4891