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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11421355_11421901_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11421355 - 11421901
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGTTTG
5'SS Class:
major
3'SS Sequence:
GTGTTTTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AGCTCTTTAATA
Flanking Amino Acid:
VFVLAGVTDLLDGFIARNWA
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
71.6
40.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
76.1
0.59
0.9
69.4
41.7
Minor 5ss
42.9
-0.8
3
54.6
44.9
Minor BPS
70.8
0.65
1.2
70.08
36.6

Associated Gene:

Gene:
CRLS1
Ensembl Gene ID:
ENSAPLG00000007013
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007275
11418558 - 11423448
4891