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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_114259932_114261607_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
114259932 - 114261607
Intron Length:
1676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGATG
5'SS Class:
major
3'SS Sequence:
CTTTCTGCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
CCTATCTGATTT
Flanking Amino Acid:
MDSITEARRRQKWSVD
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
69.5
42.7
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
78.1
0.63
0.8
73.5
31.5
Minor 5ss
30
-2.3
3.2
31.4
42.6
Minor BPS
46.7
-0.1
1.7
60.54
43.7

Associated Gene:

Gene:
PINX1
Ensembl Gene ID:
ENSAPLG00000011359
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011822
114259645 - 114312629
52985