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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_114261718_114264070_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
114261718 - 114264070
Intron Length:
2353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCCT
5'SS Class:
strong_major
3'SS Sequence:
AAATCCTCATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTACCCTCAAAT
Flanking Amino Acid:
LEKMGWSKGKGLGAQEQGNT
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.7
41.8
Major BPS
74.2
0.6
1
67
39.4
Major PPT
59.5
0.21
1
57.3
38.6
Minor 5ss
39.5
-1.2
3.3
57
47.3
Minor BPS
63.7
0.51
1.7
80.82
39.9

Associated Gene:

Gene:
PINX1
Ensembl Gene ID:
ENSAPLG00000011359
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035589
114257620 - 114313424
55805
ENSAPLT00000011822
114259645 - 114312629
52985