Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_114264951_114268484_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

114264951 - 114268484

Intron Length:

3534

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTTCA

5'SS Class:

strong_major

3'SS Sequence:

TTTTATTTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTCTCTAACAA

Flanking Amino Acid:

LNDCHGQGETESSVTNQKTT

Intron Amino Acid Position:

101

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

77.7

33.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

89.7

0.89

0.7

89.1

27.3

Minor 5ss

39.1

-1.2

50.2

46.2

Minor BPS

47.7

-0.1

65.41

Associated Gene:

Gene:

PINX1

Ensembl Gene ID:

ENSAPLG00000011359

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035589

114257620 - 114313424

55805

ENSAPLT00000011822

114259645 - 114312629

52985