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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11426928_11427395_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11426928 - 11427395
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACAC
5'SS Class:
major
3'SS Sequence:
ATGTTTGTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTACTCTTACTT
Flanking Amino Acid:
AEDVIEIMKYSMLGTYSDEF
Intron Amino Acid Position:
740

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67.9
37.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
75.9
0.58
0.9
74
41
Minor 5ss
32.3
-2
3.1
42.2
44.6
Minor BPS
62
0.46
1.6
77.74
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007052
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007341
11425760 - 11444172
18413