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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11428259_11429186_R

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11428259 - 11429186
Intron Length:
928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACTT
5'SS Class:
strong_major
3'SS Sequence:
GTAATTGGGTTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTGTTTGTAATT
Flanking Amino Acid:
SDRPLLERLKISPGENFDAI
Intron Amino Acid Position:
645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.5
40.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
51.3
0.03
1.2
50.7
47.7
Minor 5ss
36.5
-1.5
3.6
56
48.1
Minor BPS
58.3
0.34
2
78.42
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007052
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007341
11425760 - 11444172
18413