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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11429876_11430493_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11429876 - 11430493
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
TGTTCCCTAATA
Flanking Amino Acid:
EAGALVLGDQGICGIDEFDK
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
85.4
0.8
0.9
76.9
42.1
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
71.8
0.68
1.6
81.2
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007052
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007341
11425760 - 11444172
18413