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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11430636_11436527_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11430636 - 11436527
Intron Length:
5892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGAGTT
5'SS Class:
major
3'SS Sequence:
TTCTTAATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTTCTTAATT
Flanking Amino Acid:
PGLGKSQMLQAVCNVAPRGV
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
72.9
36.8
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
82.8
0.74
0.8
74.5
39.1
Minor 5ss
37
-1.5
3.8
55.8
42.9
Minor BPS
90.1
1.34
0.7
99.4
21.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007052
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007341
11425760 - 11444172
18413