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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_114322878_114322944_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
114322878 - 114322944
Intron Length:
67

Sequence Information:

Terminal Dinucleotides:
GC-CG
5'SS Sequence:
CCG|GCCACCTGC
5'SS Class:
weak_major
3'SS Sequence:
TACTACACGGCCG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTACAC
U12 Branch Point Sequence:
TTCCTCCTACCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.8
0.07
1.4
46.9
45.7
Major BPS
51.5
0.04
1
60.7
35.1
Major PPT
36.7
-0.7
3.1
48
39.8
Minor 5ss
35.3
-1.7
4
51
45.7
Minor BPS
48.6
-0.1
1.9
64.87
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017902
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023735
114322351 - 114404401
82051