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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11437627_11438701_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11437627 - 11438701
Intron Length:
1075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGAC
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCAAT
U12 Branch Point Sequence:
TCTTCCTCAATG
Flanking Amino Acid:
GIVKVSSTEEASKNKNDKCV
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
71.9
31.5
Major BPS
69.1
0.47
1.2
77
34.1
Major PPT
77.9
0.63
0.9
73.8
35
Minor 5ss
30.1
-2.3
3.4
40.8
45.7
Minor BPS
69.3
0.47
1.6
71.5
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007052
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007341
11425760 - 11444172
18413