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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11440227_11440726_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11440227 - 11440726
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTAGAATTAATT
Flanking Amino Acid:
PDGKYTLPTKCLVPECRGRS
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84
30.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
86.4
0.82
0.8
80.6
36
Minor 5ss
39.5
-1.2
2.8
48.7
47.5
Minor BPS
54.4
0.22
1.9
75.18
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007052
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007341
11425760 - 11444172
18413