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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11443285_11443772_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11443285 - 11443772
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTA
5'SS Class:
major
3'SS Sequence:
TGTTTCTGATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTTCTGTCAATT
Flanking Amino Acid:
YKGWKLYFSEAYADKSPFVL
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.6
31
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
70.2
0.45
1
71.1
39.6
Minor 5ss
49.9
-0
2.4
67.2
43.9
Minor BPS
50
0.08
2.2
77.15
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007052
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007341
11425760 - 11444172
18413