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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11443848_11444009_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11443848 - 11444009
Intron Length:
162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
CCATCTCTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
ATTGCTCTAATC
Flanking Amino Acid:
KADWKRMPQPVTSRLVQSTL
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
58.4
43.1
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
79.7
0.67
0.8
76.7
31.7
Minor 5ss
37.9
-1.4
3
43.6
46
Minor BPS
56.8
0.19
1.7
69.03
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007052
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007341
11425760 - 11444172
18413