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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11445227_11445764_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11445227 - 11445764
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCATCGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATGTTATCAACT
Flanking Amino Acid:
VFKAVAVLRRRKIIFEKQWF
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.8
0.67
0.9
76.8
37.2
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
56.2
0.27
1.8
75.68
40.7

Associated Gene:

Gene:
TRMT6
Ensembl Gene ID:
ENSAPLG00000007761
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008062
11445132 - 11455792
10661