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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11445893_11446307_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11445893 - 11446307
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTACGG
5'SS Class:
major
3'SS Sequence:
CCTTTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTTACAAATCT
Flanking Amino Acid:
PRREVEETTTDTKEAGTDNR
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
51.8
44.8
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
82.6
0.73
0.7
81.3
23.8
Minor 5ss
37.5
-1.4
3
48.4
47.1
Minor BPS
47.3
-0.1
2.3
78.02
43.9

Associated Gene:

Gene:
TRMT6
Ensembl Gene ID:
ENSAPLG00000007761
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008062
11445132 - 11455792
10661