Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11448624_11448707_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11448624 - 11448707

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

GTGTTTCTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTGAC

U12 Branch Point Sequence:

TGTTTCTTACAG

Flanking Amino Acid:

QDKYIKKKKKKYEAVITIVK

Intron Amino Acid Position:

142

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

80.4

26.8

Major BPS

71.3

0.53

1.1

63.1

44.5

Major PPT

82.7

0.74

0.9

76.5

37.7

Minor 5ss

33.7

-1.9

3.2

40.3

40.1

Minor BPS

57.3

0.09

1.8

64.96

42.7

Associated Gene:

Gene:

TRMT6

Ensembl Gene ID:

ENSAPLG00000007761

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008062

11445132 - 11455792

10661