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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11448792_11449934_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11448792 - 11449934
Intron Length:
1143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TATTTCTTAAAA
Flanking Amino Acid:
MYYAREPGKINHLRYDTLAQ
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
77.1
0.85
1.2
81.78
32.5

Associated Gene:

Gene:
TRMT6
Ensembl Gene ID:
ENSAPLG00000007761
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008062
11445132 - 11455792
10661