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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11451568_11451780_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11451568 - 11451780
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCATTGTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTGTTTCATT
Flanking Amino Acid:
DNKEKDNKENVREKQRKQWE
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
76.4
32.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
65.8
0.36
1.1
66.3
38.5
Minor 5ss
36.2
-1.6
3
46.6
41.5
Minor BPS
52.7
0.17
2.1
77.48
40

Associated Gene:

Gene:
TRMT6
Ensembl Gene ID:
ENSAPLG00000007761
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008062
11445132 - 11455792
10661