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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11454643_11454725_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11454643 - 11454725
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATCAT
U12 Branch Point Sequence:
TGCTGTATAACC
Flanking Amino Acid:
PFVVYCQYKEPLLECYTKLR
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
74
36.5
Major BPS
75.9
0.64
1.1
77.7
35.2
Major PPT
81.7
0.71
0.9
87
24.2
Minor 5ss
33.9
-1.8
2.9
42.4
44.3
Minor BPS
49.2
-0
2
63.6
42.1

Associated Gene:

Gene:
TRMT6
Ensembl Gene ID:
ENSAPLG00000007761
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008062
11445132 - 11455792
10661