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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_114624265_114664635_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
114624265 - 114664635
Intron Length:
40371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTATTT
5'SS Class:
major
3'SS Sequence:
TCTTTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TACATCTTAACT
Flanking Amino Acid:
ISWCLTGPALDKHHVNGNRM
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
76.1
33.6
Major BPS
73.9
0.59
1
81
30.2
Major PPT
87.5
0.84
0.6
81.2
30.9
Minor 5ss
50.2
0.01
2.8
73.9
42.5
Minor BPS
73.5
0.82
1.3
81.58
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013095
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013635
114458272 - 114664708
206437