Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11463972_11466081_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11463972 - 11466081

Intron Length:

2110

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTACA

5'SS Class:

major

3'SS Sequence:

TTTGTGTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTCAT

U12 Branch Point Sequence:

GATTACTTCATT

Flanking Amino Acid:

NPECKEILRKSGKIDRERSE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

74.4

Major BPS

78.6

0.71

79.6

32.9

Major PPT

81.9

0.72

0.8

77.2

37.1

Minor 5ss

37.3

-1.4

2.6

40.4

39.1

Minor BPS

56.1

0.27

1.9

75.11

41.4

Associated Gene:

Gene:

CHGB

Ensembl Gene ID:

ENSAPLG00000008282

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008603

11460969 - 11471621

10653