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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11466176_11467233_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11466176 - 11467233
Intron Length:
1058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTCCAATT
Flanking Amino Acid:
PVEKDHMEEMVTRCIVEVLS
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74
36.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.4
0.77
0.8
77.9
36.6
Minor 5ss
30.8
-2.2
2.6
33.6
35.6
Minor BPS
55.8
0.26
1.8
80.24
36

Associated Gene:

Gene:
CHGB
Ensembl Gene ID:
ENSAPLG00000008282
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008603
11460969 - 11471621
10653