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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11467278_11471572_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11467278 - 11471572
Intron Length:
4295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TCTGCAATAATT
Flanking Amino Acid:
LGLLGAAALAGVSAVPVEKD
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
63.1
43.4
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
89.5
0.89
0.7
81.7
35.4
Minor 5ss
30.3
-2.3
3.3
37.8
47.1
Minor BPS
51
0.11
2
73.84
43.2

Associated Gene:

Gene:
CHGB
Ensembl Gene ID:
ENSAPLG00000008282
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008603
11460969 - 11471621
10653