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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_114863890_114864590_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
114863890 - 114864590
Intron Length:
701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCAATCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TGTCCACTAATT
Flanking Amino Acid:
NACIFAYGQTGSGKSYTMMG
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
67.8
0.4
1
61.5
38.8
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
53.6
0.19
1.9
76.83
39

Associated Gene:

Gene:
KIF13B
Ensembl Gene ID:
ENSAPLG00000005429
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005668
114814550 - 114931343
116794
ENSAPLT00000038680
114814550 - 114931343
116794