About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_114864772_114865181_F


Intron Information:

Intron Rank:
6

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
114864772 - 114865181

Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AGG|GTAAGTAAT

5'SS Class:
strong_major

3'SS Sequence:
TCCCCCCGACCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTATAAA

U12 Branch Point Sequence:
TTATAAATAACC

Flanking Amino Acid:
EKVRDLLDPKGSRQSLKVRE

Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
89.2
0.92
0.9
87
30

Major BPS
78.6
0.71
1
78.6
31

Major PPT
61.8
0.27
1
54.6
35.2

Minor 5ss
37
-1.5
2.8
43.1
43.9

Minor BPS
51.1
0.01
2
71.22
38.9

Associated Gene:

Gene:
KIF13B

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

114814550 - 114931343
116794

114814550 - 114931343
116794