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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_114866833_114868841_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
114866833 - 114868841
Intron Length:
2009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
GATGAACTAACA
Flanking Amino Acid:
THTLYDVQSGTSGEKVGKLS
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
82.8
0.74
0.8
77.1
31.6
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
43.8
-0.4
2.1
56.9
41.3

Associated Gene:

Gene:
KIF13B
Ensembl Gene ID:
ENSAPLG00000005429
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038680
114814550 - 114931343
116794
ENSAPLT00000005668
114814550 - 114931343
116794